PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC148_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 283aa    MW: 31033.3 Da    PI: 7.8709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC148_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09194235955
                HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ++RR+ri +++ +L+el+P+ +      K++ +++LekA+ Y+k Lq
  RrC148_p5 194 AKNRRERISERLKTLQELVPNgN------KVDLVTMLEKAIGYVKFLQ 235
                69*******************55......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12187242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-11187239No hitNo description
SuperFamilySSF474591.1E-13189245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6194235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MALLNDHPNE PNYISKQNSS SSEDNSSPEN YGLASSSSTM NSDHQGVVFY PSGESVEDHN  60
SLLDFNGSSF LNFNNNNHHE SFHPTISCGG GLSFLEGNNM SYGFTNWSQH HMDIISPRPT  120
ETPGINQGHK DWLYSDSTVV TTGSRHESLS PKSAGNKRPY TGKSIQPPSK KPSSGGKAKP  180
KPITPPKDPQ SLAAKNRRER ISERLKTLQE LVPNGNKVDL VTMLEKAIGY VKFLQLQVKV  240
LATDEFWPAQ GGKAPDISQV KDAIDAILSS SQRDRNSNPI NNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105207.10.0PREDICTED: transcription factor bHLH83
RefseqXP_013647254.10.0PREDICTED: transcription factor bHLH83-like isoform X1
SwissprotQ9C7071e-138BH083_ARATH; Transcription factor bHLH83
TrEMBLA0A078FFF70.0A0A078FFF7_BRANA; BnaA07g20890D protein
STRINGBra004169.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-111ROOT HAIR DEFECTIVE6